PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G26130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family E2F/DP
Protein Properties Length: 439aa    MW: 48526.1 Da    PI: 8.8026
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G26130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.51.1e-2353118171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      rk+ksL+ll+++f++l+++ + + + l+++ak+L    v  +rRRiYDi+NVLe+++++ +k+kn+++w+g
  LPERR02G26130.1  53 RKQKSLGLLCSNFVALYNRDDVESIGLDDAAKRL---GV--ERRRIYDIVNVLESVGILMRKAKNRYSWIG 118
                      79*****************999************...**..****************************98 PP

2E2F_TDP75.84.4e-24197277171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                      rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e     ++++k+RR+YDi+NVL++ln i+k     ++k+++rw g
  LPERR02G26130.1 197 RKEKSLGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEghaenSMRTKVRRLYDIANVLSSLNFIDKiqqadSRKPAFRWLG 277
                      79********************************************************************99*******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.9E-2649119IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.48E-1652117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.4E-2953118IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.1E-2154118IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.8E-22194278IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.2E-30197277IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-19198277IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.03E-12199277IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAAAAAVMDA APAPLSSMTD VAEAEAVPAL PQRQQPVFVE GRGGKLRDHA YSRKQKSLGL  60
LCSNFVALYN RDDVESIGLD DAAKRLGVER RRIYDIVNVL ESVGILMRKA KNRYSWIGFG  120
GVPMALRELK ERALREKSGL APLPVEEPSS ALMSDDEDED KMGDVDGDTE SEKLSQPFDN  180
PSEKPGAPRC RLRSDHRKEK SLGLLTQNFV KLFLTMEVDT ISLDEAAKLL LGEGHAENSM  240
RTKVRRLYDI ANVLSSLNFI DKIQQADSRK PAFRWLGSAG KPKAENGVTI AIPPPGKTMS  300
NKRVFGTELT NININQSKLD SAIPKKPKLA QSGGDILKNC KLSVQRQLGQ GAQGDFVYGP  360
FHPAGARKQE LNNGNKGQQD SVRDWESLAA SFRPQYQNQA LCDLFAHYVE AWKSWYSEFA  420
QGSSMMQQHF GMPVTNQFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-37522693228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115370.0AK111537.1 Oryza sativa Japonica Group cDNA clone:J013041C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626334.10.0PREDICTED: E2F transcription factor-like E2FE
TrEMBLA0A0D9VKU00.0A0A0D9VKU0_9ORYZ; Uncharacterized protein
STRINGBGIOSGA005653-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-102DP-E2F-like 1